NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10192050

Scaffold Ga0126371_10192050


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10192050 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2133
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008484Metagenome / Metatranscriptome332Y
F019463Metagenome / Metatranscriptome229Y
F068660Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_101920501F068660N/AGAKQHFTNSTKADPMRPLPFRKLAELAAKDQSWKEAADWMERYVATQPQQLGYFRAMLGDYRLAADQVQQGTQALQAALNADPYLYWAHYRMARVFERNKDNEDAIKEYEFIVRYAFDRDPDVYVKLATLYKDAGRKNDALRVLVKGHRIFATNSAIYRLYREVREVN
Ga0126371_101920503F008484N/AMKTFTDAELKLIRKLTIQPAQTVLQIKEACPKHSVCMPLPVFRVYKIDENSFEAQWNGYHEAGPRQIFHFGQDLN
Ga0126371_101920504F019463AGGAGGMVELRFRIRNNVFTAQDVVSRRTTIRPLSLCLPSVEEAALLGEVDETGRVVPRRGVFFTGNLRTGPVIEGFEDCALGEFVKAQLEALSQNGEPPARCEVHGLDPFLEMAEPEQAERLRDLISVCEFRSNEFTP
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