NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10260247

Scaffold Ga0126371_10260247


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10260247 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1852
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024457Metagenome / Metatranscriptome205Y
F049197Metagenome147N
F051044Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_102602473F024457GAGGMKTIKRSKVIRACNGRCQVGDIVIFDVLGAVPRGSGATEAVARDAVRRLAEALRAPYEDFNGEAFLIVPG
Ga0126371_102602474F049197AGGGGGMVREEARRTLLREYDNWAKHHPDDATKVFFAYLQRERSDLLDFHAVGGDKWATVHGWLYYTGRVKD
Ga0126371_102602475F051044AGGCGGMMRTIEFVYYLFWIAVLIAALHVAEVRPWAERFALIFWPILIGESIWFFAS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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