NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10409230

Scaffold Ga0126371_10409230


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10409230 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1499
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034094Metagenome175N
F076946Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_104092301F034094AGGAGMPGHILLTPLKWFQEIGHYPAINVDGRDLKVSCALAAAPDLLLSNNAELTGLAADLGILVGEQPIDKHGNPLKQGIGCFYCSDSQAPRDDLPGMLDPLLDGWFYLKPDSYAAVWDQVRDGGYVGCSITLKVGPVQNELPPHVWDVSQPLSILAVWLRFTRKPIANKPANQAARPDAATRIAPRGFWLSAFRNSNGW
Ga0126371_104092302F076946N/AWGEGAVYRAVASLQRVFDPPTEYRAHWDIEREFAQASKLKAAPAIEHGGDLRHIRYRKHA

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