Scaffold Ga0126371_10506802

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126371_10506802

Scaffold Ga0126371_10506802

Overview

Basic Information
Taxon OID	3300021560 Open in IMG/M
Scaffold ID	Ga0126371_10506802 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1355
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location Name	Panama
Coordinates	Lat. (^o)	9.1086	Long. (^o)	-79.8436	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007602	Metagenome / Metatranscriptome	348	Y
F015515	Metagenome / Metatranscriptome	254	Y
F099816	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126371_105068021	F099816	GGA	MSDHSITDPQHWLNRAREARALADHIANPEAKRTMLKNADDYERLAQRAQERAAGRW
Ga0126371_105068022	F007602	AGGA	MKHPTPSDFIINIKESHVSVIFKPSNSDYHFGRLADPKDIARFGPLSSPNVRHGNTGDTGDYPSEEVAQMAHSLAVKAITTP
Ga0126371_105068023	F015515	GGAGG	MSSYASYCHDQGIDCVRRASLARSLAVATYWRWLGLRWLRLGEQVTASVVGHASDGVDASSIRVSDLDLERETTHAKVNADARRL

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