NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126371_10596837

Scaffold Ga0126371_10596837


Overview

Basic Information
Taxon OID3300021560 Open in IMG/M
Scaffold IDGa0126371_10596837 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1253
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019178Metagenome / Metatranscriptome231Y
F033469Metagenome / Metatranscriptome177Y
F038374Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0126371_105968372F033469GGAMDSETQELLNLWRALSAESKARLLAKARYVALAAGLENTPEFAALFERPAADTVGKK
Ga0126371_105968373F038374GGAGMSVWVMITYMLNAQAVVVVPGQDPHIISQVEFRSRELCDQARQQQVRTDAKTGIADQYVYKCVERKARTS
Ga0126371_105968374F019178N/ACACAGQAVSDAGPGRYSVTATSTHGVVAARERAVKLANRYCGRSSQQAVVESFDDVRLGGVIGDPTSNLVFRCGAPNTTALSR
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