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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021590 Open in IMG/M |
| Scaffold ID | Ga0190354_1000021 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29124 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (70.97%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036512 | Metagenome | 169 | N |
| F040420 | Metagenome | 161 | Y |
| F055334 | Metagenome | 138 | N |
| F076704 | Metagenome | 117 | N |
| F084956 | Metagenome | 111 | N |
| F084957 | Metagenome | 111 | N |
| F102256 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190354_100002112 | F084956 | N/A | MKRKRTRAICGIAICGYTICGDTSYYLPTVASSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPFTDDNATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDFHGTLSEVIQQFMSVAGMDIESKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK |
| Ga0190354_100002117 | F084957 | AGGAGG | MEMKLEDYKKKNNTKKIKCPSGLEVTVNNITPYTLLKVVDNLGINPTREAVYTKPVIDALFKAFLKEPVIGKDIEMEDFLREDYIFLHDLIMERVMMPEE |
| Ga0190354_100002121 | F076704 | GGAGG | MPEFGAVKGWKNRVRIGLESTPNESIWHDGRDPLLNSLTMDTSVDIDKVFVVGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEFIYAGNNSYLDLLTATGMYGESLQSCKILMNTTSSSDSADYNRVIYGVKFHSYRTSTAAGDLVTESVDYDATNISTH |
| Ga0190354_100002123 | F055334 | AGGA | MTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPIRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLRDLDAIMEKLRTLRHDDSKWFELDYKGGIDLEYSPIEKWILQSAVVHVKVEA |
| Ga0190354_10000215 | F102256 | N/A | MSHCKLKVYSCKNCYLEFYYENHITHCPFCGDKLKYVGRIQENEIEGPIYTLKYSTGEKMQKKIEEEEAIKEAEESWYLWEE |
| Ga0190354_10000216 | F036512 | GGAGG | MYWKVPDYLKKYVRIQDMLRNIFRPCDCGEELKKCEKDKKYFARRAETLSKALAKSISLPKPPDPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRVNVSDCDDYALLMASFVAAVFAKPYYDKQVAFAISWSHNHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG |
| Ga0190354_10000217 | F040420 | N/A | MVYGIVKIFGLFAIGILLSVSLSQFLMMDSIDSHPYIDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLGHSIEIIEPQTDEIVGCVKEDNKNYVRIPVWNDCLYYSNIKIA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |