NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190354_1000027

Scaffold Ga0190354_1000027


Overview

Basic Information
Taxon OID3300021590 Open in IMG/M
Scaffold IDGa0190354_1000027 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25266
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (58.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050821Metagenome144N
F069552Metagenome123N
F083515Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0190354_100002713F069552N/AMKKNSITWFMIECTKPITIQLRCFECRFIFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCEEEYFLNNIIETDVNSTGFGTANIEVETTIPNDEEYRRLRKLINDWYKQKVDTFSFFLGIVMYSSYRDWRRMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSKVPKFLGTHTYWD
Ga0190354_100002736F050821GGAMIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRSGDIAYVTSALAPNILRLDEMKELLEGRRIRIPLFKIKDKFLPKYY
Ga0190354_100002744F083515GGAGGMKVKRFERIESLSKFLEREERGEILLKQVIVVPHTSDVFYVFYNEGKNYDITSKIIDFRNFLVREEKIFDDMIRSVEKENIYWESCSSPLSKRVLDYLLWLKEQLTMSAIAVNEMMRETKEILMRRY
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