NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190354_1000207

Scaffold Ga0190354_1000207


Overview

Basic Information
Taxon OID3300021590 Open in IMG/M
Scaffold IDGa0190354_1000207 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10269
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F056227Metagenome137N
F096390Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190354_100020720F038026GAGGMLKFMIDKNEDEYILIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSHYAKVEINRRVVLDSQ
Ga0190354_100020726F056227N/AMEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHMDILSIFDTHGLEYLYVKYPQENREEVKVPSAENYRDVDIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190354_10002077F096390GGAGGMADIIKEIINLFVYPITHEIEAHGKLLTDEEKQDLLEKEKKRYERELIRIFEKFDRL
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