NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190354_1000254

Scaffold Ga0190354_1000254


Overview

Basic Information
Taxon OID3300021590 Open in IMG/M
Scaffold IDGa0190354_1000254 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9390
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F048033Metagenome148N
F096388Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190354_10002541F096388N/AMIRIPILDNREDRNWFHQFEHPVYTMLGGNNKMVEQKLKQDMKRLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNSFGDVSVVFDFT
Ga0190354_10002542F048033AGGAGGMIVTRLGNMIVVNVDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQVEGEDLSEDMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE
Ga0190354_10002545F033663N/AMLSLTEKLKIMVQESSEEDVTQVYGIRCKTKNEKIQDWDYDSLTNITFLYKQRCALFKDIQEDGMAVPEFFFEIKQDMLMLRDLVLGKFNILLVIEEEN
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