NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190354_1000529

Scaffold Ga0190354_1000529


Overview

Basic Information
Taxon OID3300021590 Open in IMG/M
Scaffold IDGa0190354_1000529 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-12-13_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7090
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190354_10005294F040420N/AMVYGIVKILNLFVVGILLGVSLSQFLMMDSTNSHPYIDGTYVCRDFSRDLILSASKHHIYLDYVYIPEKNHMMVGLYNPLEDSIKIIEPQTDEIIGYVKENDKNYVRIPVWNICFYYSNVKIA
Ga0190354_10005295F036512GGAGGMYWKVPNYFKKYIRIQDMLRNIFRPCDCGEELNECIKDKEYFAKRAETLSKALAKSISLPEPPNPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLSLNTWIKILSPIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGETTGIYKTEKIWFMG
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