NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194060_10001700

Scaffold Ga0194060_10001700


Overview

Basic Information
Taxon OID3300021602 Open in IMG/M
Scaffold IDGa0194060_10001700 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15763
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F001460Metagenome / Metatranscriptome690Y
F017995Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0194060_1000170016F017995GGGGGMSKIKEYIEIIAANCDECSGAGFIFFGDENNFDVEPCDCIADVSDELTVDWVNE
Ga0194060_1000170030F000980AGAAGVCTGDCDALIEYTIKDGYGWPGGVMQLTCPCNSKCTLVSVEDATIPYTDTPLTKEEPMETETLAVIVPDTYNANLLVTYKVIHGYSDATYDTDKVASIEWSLHNGRQSQKQVTTLLSKINTVKDIITEAYEDSDDKETLRAIAEALDIELVREVQFTASVEVSGTYSFNILESDYDLDLESEVTDALYADSNNGNIQIDDTEVCNVRES
Ga0194060_1000170032F001043N/ALSLIPQTTSQQGIQGDNVSDYKDGFTDGYKFAREEIMEKLSEIDIAEIDTWILDRLSEMIEGGKI
Ga0194060_1000170037F001460GAGGMLGYTNSDLNRMINAVHDAKLFYLRTPSDLMDKEPLRKDLEDAVSFMQGLWAEGYFD
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