NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194060_10053317

Scaffold Ga0194060_10053317


Overview

Basic Information
Taxon OID3300021602 Open in IMG/M
Scaffold IDGa0194060_10053317 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2347
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007028Metagenome / Metatranscriptome359Y
F069735Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0194060_100533171F069735N/AMNDLLKEFIGPQIEEIISAYVSGSTDSLYFITIPDVDTLDLGIHEMASLVARTSNVYGRVARLAGMARAQYKLIEGSYKKVYKANRVGKNEAEREASALEAAENEYTALITAEAIVNLAESMEVAARIASESARKLIDKVQSMQIASAREEKGYYNEKDFNTY
Ga0194060_100533175F007028AGGAGMPKITQTAQEQSVNSPIDQFVSNNPEITVSTNPVFICGVNRKVNIGNFENIDIYAAISIPLSEGSFLDQEALTSLVSEAAAYGFNLVSKETGERYSLIKESQQAK
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