NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10016341

Scaffold Ga0226832_10016341


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10016341 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2405
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F001048Metagenome / Metatranscriptome793Y
F007052Metagenome / Metatranscriptome359Y
F030785Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100163412F030785AGGAMKTATVEILEEGETIFGSRTRGEYMVRRYEDGIEMGGEFHYTLTEAGAAVRKWENQKEK
Ga0226832_100163413F001048GAGMKIVSTKQFWWRFNHLKRNGAEITVTDRTRPFDLKEWNRIESLVNKRVRWELGSEGYATWSECGYKDIPTLAKAYRIS
Ga0226832_100163414F007052GAGMKNKNETYFVARLINKGKFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFAYELDSEELLKNSTRVL
Ga0226832_100163415F000615N/AVSGLERPENIMCRIRCFYECSDGTMGFAEMVLPYEEDIAGFVKHWKTGGRMVITEHIDLV
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