NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10038026

Scaffold Ga0226832_10038026


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10038026 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1632
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003330Metagenome / Metatranscriptome493Y
F047632Metagenome149Y
F103058Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100380262F103058GAGGMKMVIVFDTEDQQGMKNTLKIVDALARDYLGRGMDDSYKRNFGKIEFIKMLRSFAAEVSLATSDDSTDEDGTGLRFAKVFSEKVWERKENDGRW
Ga0226832_100380263F003330N/AMRKRDAWDNPIPQVGDVVMSLPLEGDPGTVVRILQVNANGAWVVAVKWFTWDGGRTTEEYINELRIVSPV
Ga0226832_100380264F047632GGAGMKVGDMVQWRDQTSYRGLCGIVTKIGAHTQGMKFRRESPDIFVHWLTFPKDYMVGAGWEKVKDVELLSTGETE
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