NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226836_10013887

Scaffold Ga0226836_10013887


Overview

Basic Information
Taxon OID3300021792 Open in IMG/M
Scaffold IDGa0226836_10013887 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Illium_FS922 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4375
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameIllium vent field, Mariana back arc basin
CoordinatesLat. (o)18.21359Long. (o)144.70748Alt. (m)Depth (m)3582.53
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006364Metagenome / Metatranscriptome375Y
F007608Metagenome / Metatranscriptome348Y
F012070Metagenome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0226836_100138872F007608AGGAGMSQENKYEKLPNSMYPKVRQQVVDRIATFEKVIEEHAVAQKEALKMVYEQLEEAKNDLKYLDEVN
Ga0226836_100138873F006364AGGAGMELEIDNDTRKMRIINYLDYMDDKSLQEISVALYNLSIRRREVKKQKELINESGK
Ga0226836_100138876F012070GGAMPIEIKMIEAANESYDDYILYEILCDYCDEEYTIKYIMDKRPKQSIECCPFCSNLIEEPAEIIDDEEIGWD
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