Scaffold Ga0226657_10105127

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0226657_10105127

Scaffold Ga0226657_10105127

Overview

Basic Information
Taxon OID	3300021843 Open in IMG/M
Scaffold ID	Ga0226657_10105127 Open in IMG/M
Source Dataset Name	Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 spades
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Toronto
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1237
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location Name	Toronto, Ontario, canada
Coordinates	Lat. (^o)	43.5479	Long. (^o)	-79.6609	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001564	Metagenome / Metatranscriptome	670	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0226657_101051271	F001564	N/A	APEDGGRCDHCPLDKLDAAQSSETGLLIRRALDLRAALKLGVRISLEEIGADEFYAMLILEEERERLDAERVNRERS

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