NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213854_1167961

Scaffold Ga0213854_1167961


Overview

Basic Information
Taxon OID3300021855 Open in IMG/M
Scaffold IDGa0213854_1167961 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater sediment microbial communities from pre-fracked creek in Pennsylvania, United States - G-2016_18 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)845
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.4517Long. (o)-76.3954Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003383Metagenome / Metatranscriptome490Y
F069734Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0213854_11679611F003383N/AGCPFPAPFLLSRRPNPRVAPRFRAFGCAGDGSLKLPRASMPLALPVSASFPSCPGASAFSCRACDEGLGSPLVLHLRLYRRSVIELPRCSHHSAVPTYRSSGCPKFQPFGIADDSLSESPRTSNPPAPIDGYPSYPGSRTTRFASVESPGCPGHFPFGYDD
Ga0213854_11679612F069734GAGMSPWLNRTLHLRLAPRMNLRVHSGHGNLGMASCALLISIRRFTIGKPTMNSPTETLTYAFYHASVAVPTSY
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