Scaffold Ga0210334_10163210

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210334_10163210

Scaffold Ga0210334_10163210

Overview

Basic Information
Taxon OID	3300021859 Open in IMG/M
Scaffold ID	Ga0210334_10163210 Open in IMG/M
Source Dataset Name	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	746
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.178	Long. (^o)	-123.853	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004551	Metagenome / Metatranscriptome	433	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210334_101632102	F004551	N/A	LLPLVLGVAEVSAQAKKTAPPPKSPPAQEKSISVNVFMRDSNKNELLVGTHIWPDYPDYNAFALQQFFAVMKALEPAYKQDDEVAYTWSGKGNVTKCSIYLESAEVPVKNGTGAIVGCEANGVSNVAVTSVADPKRAYSTSRDPKHIDDVMDLFKKQSERARASIHK

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