NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213853_10219619

Scaffold Ga0213853_10219619


Overview

Basic Information
Taxon OID3300021861 Open in IMG/M
Scaffold IDGa0213853_10219619 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)945
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.1752Long. (o)-78.4168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F030161Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0213853_102196191F030161GGAGGMRRRMLAVLAGAALTMAAMPAQAAWKSYVNRDLGFSFVAPGEVQTSEGTFRGTIAGPRQTIVYRSVEDNIEYKVTVMSFLQAQAEGATILGEREYMFQNGKKVLTDAFARAGSGKDAVYGRKIV
Ga0213853_102196192F000823N/AWHGYISHPLGFAFAAPGELKVERGTYRGAVAGPLATLVYRFADNDIEYKVVVIDVGDKADEAATLLGEAEYLFQDGKKVLMDTFGGVDRQYGRKLTVDLPDNAGRTTAAFFFINGRIISLQATVLPANGDYDTPEMGRFVDSLTFFTVRASDDAIELPAPPK
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