NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213853_11411351

Scaffold Ga0213853_11411351


Overview

Basic Information
Taxon OID3300021861 Open in IMG/M
Scaffold IDGa0213853_11411351 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)677
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.1752Long. (o)-78.4168Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001121Metagenome / Metatranscriptome771Y
F069287Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0213853_114113511F001121N/APTATGKDIVVVEPTTAGVSVPGAAVDLNVAALGTFSAANNICTLGGNPVVLQRPASGTSTADICLFSQSGFDTSMTYSVSGPGDVAVISKQPVGLGIVHLALQVAAGAQPGARMLFIQDTNLDKTAASGALEVQ
Ga0213853_114113512F069287GGAGGMSFVQRRKFLWILFLAGLALLAVAASATTLARLRFEELAGQATAVARLRCLGAQSRWEGGEIWTETLFEVVASHKGLLPGLVTIRTIGG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.