NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063141_100501

Scaffold Ga0063141_100501


Overview

Basic Information
Taxon OID3300021864 Open in IMG/M
Scaffold IDGa0063141_100501 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S21 C1 B12 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)52.621788Long. (o)-16.497225Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000797Metatranscriptome886Y

Sequences

Protein IDFamilyRBSSequence
Ga0063141_1005011F000797N/AGGASTSQVVPTQDWKQYKRKDKPTKYLNTPLYMGAWAQIKNEGAYAQFSWTIKADIPTVFLPALLRARLSDFPETPTGTYIETCNGVLEGYFGNLEVTSKTGMKRFLEQFQAYYSNGGKCWRWNTPECVKKWKFGPWGEDLFMQFAMDDAEVMKKTDFTLTDTGTCPGQRPKADKKNGDFVPSCTVTDVYTFVAVHPMRNLTAWQTCYDSFSKRT
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