NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063132_126777

Scaffold Ga0063132_126777


Overview

Basic Information
Taxon OID3300021872 Open in IMG/M
Scaffold IDGa0063132_126777 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S5 C27 B21 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1060
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)34.719778Long. (o)-14.259726Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079576Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0063132_1267771F079576AGGMLAVASRTRFAAAVPRSARAVAASPWGTDHWRHDKQEFIQWATRAMKEETSRERREFYAYCTISFGDVDTDKDGFINYRQFDRLLETVAATPRRFGLAPQSTLNYEDRLAQHKKLFDVLDTAGGPARGVIAMDQFLDWAFEHVLGKLGSIPKKDVALLHAENYTEKEYLDFIEVAVNDKTSYNRSSFYTFMLNLFVEADESCSGRVNRAQFDKLLTRAAQVPRHFGLAPPDVDKATRDKMFASMELHRGDQRTGYVTFRKFYEWSIDHIAEKIRLHKAGKEHVH
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Institute for Fundamental Biomedical Research
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