NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063143_1013343

Scaffold Ga0063143_1013343


Overview

Basic Information
Taxon OID3300021884 Open in IMG/M
Scaffold IDGa0063143_1013343 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S25 C1 B22 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)751
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)58.000163Long. (o)-16.520083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089792Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0063143_10133431F089792AGGVIARKTKVSIEAVASAGTLITDSTVGTGGGFSVCGACWGSGLPGNCASEVSLLCVSVGDPKQGLTARITSGPRHELQHLLLSRVVTVSELDVNLWFGLGSEININLNLRNCKVREGFEGILNRVRVLGCRQTIHVNLDGAGIVLATELVNKTQLEERFLGSAFEGASQLLEILATIGLTFGLRIITSGTLTERAIIAFVTSIAMALLVLEPRPVSTPSR
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