NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063135_1054787

Scaffold Ga0063135_1054787


Overview

Basic Information
Taxon OID3300021908 Open in IMG/M
Scaffold IDGa0063135_1054787 Open in IMG/M
Source Dataset NameMetatranscriptome of Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Stratiphyt 2011 S11 C1 B13 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)40.529594Long. (o)-13.190131Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010543Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0063135_10547871F010543N/ALGYVSAISLRESPDCPSSQEVFSYNERVGTAAGFLQLSACSQSGINGAGLSCVPDNQYFATGMNGDEDLGEDIIMKGEPYHYNQKPPAKKLFATGMNGDEDLGEDIIMKGEPYHYNQKQKKQALFATGMNGDEDLGEDIIMKGEPYHYNQRPANKKLFATGMNGDEDLGEDIIMKGEPYHYNQKAQKKQALFATGMNGDEDLGEDIIMKGEPYHYNQRPANSKLFATGMNGDEDLGEDIIMKGEPYHYNQKK
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