NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063869_1011726

Scaffold Ga0063869_1011726


Overview

Basic Information
Taxon OID3300021922 Open in IMG/M
Scaffold IDGa0063869_1011726 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from Norwegian Sea - 10m ARK-5M ARK-5-2 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Norwegian Sea
CoordinatesLat. (o)73.0188Long. (o)9.8566Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052329Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0063869_10117261F052329N/ARSEQVPGMLSVLALSAAAQIEVELQFGGVGEPIYIVDEPQSVFPTGLNELMGMVEQMQLSQQQPYQMMQNPCTNDQVRFGCGPDAACLKAHLSQLSPSCAMFLLKSTTEARPSPSPAPMEAVGFYSSSYLGQDGQMYLEEGQISPREGKMFRGEMQGVMDLVMSEFFGQPQPQPRSAPSPRPSTSAHPCDAEVTKCKDQLNGVTLRVPMQKCLVENYEKLSSGCKCFLHQVMGQELEQAVPAAKSSADPRVPAVAIAEGRLSGSLVFLREAGNDDVPPPFAVENGHPPPGHHRFTCALFMTLFFLSVFLVLRRVISMCCAPAKPRFAAVVPPQQRVQLSVEPLVAKITTTKM
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