NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0063096_1021458

Scaffold Ga0063096_1021458


Overview

Basic Information
Taxon OID3300021925 Open in IMG/M
Scaffold IDGa0063096_1021458 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-51M (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)73.0188Long. (o)9.8566Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008555Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0063096_10214581F008555N/ALSPERTVQPTLKKMIYAVALLPAAVLANTAEVSTSDVRKGAAFENIKASWGKALNVGDFKTNLRCNYDYNENKDFLKEVSLAGDLLDGSGDDLSVSYDVNHNFKTKNTEVKLTANTQGTTLSVDYDTESNIKEVSAARAVDVADRSVDLQPSWLVKAKTARVKMMSALGGDNKLSAQVDYNTDGRSTSYELGYSRQLEEGKEVSATFKPDSSELDVEYVDSKFESGATWAAKASVDTSDAGNLLDATKLTLKRSWSW
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