Scaffold Ga0063754_1006401

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063754_1006401

Scaffold Ga0063754_1006401

Overview

Basic Information
Taxon OID	3300021937 Open in IMG/M
Scaffold ID	Ga0063754_1006401 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from the South Atlantic Ocean - 30m ANT-15 Euk ARK-20-2 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	995
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	South Atlantic Ocean
Coordinates	Lat. (^o)	78.8697	Long. (^o)	8.1122	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049400	Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0063754_10064011	F049400	N/A	SSTRILKAFPPIEVGTMRCVSLMLLAPVASASELRGQSCMTLDTQHRVGVQNKLAGICEDMCKEVGAYPQCAQCPGFVAPDSTPGVMTWDELLEHMDNLVEWGQGEIKGWHSQAAKLIQEHHQAIAFNTEKGCLANDLSLRTQMQNKLSGICEDMCKEVGAYPQCAQCPGFVAPDSTPGVMTWDELLEHMDNLVEWGQGEIKGWHSQAAKLIQTTDKSAHTLESFSAVVSAAKAKNPSFSEGTCAEMYGTKTRLGGSVPPSDFVVGCEDVCASVKALKEYWGEGEMATFACGQGAAYGCVYDGTPPVQMSGIGC

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