Scaffold Ga0213921

Basic Information
Taxon OID	3300021952 Open in IMG/M
Scaffold ID	Ga0213921_1000130 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021952 Open in IMG/M

Scaffold ID

Ga0213921_1000130 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30067
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (91.11%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

30067

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (91.11%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9266

Long. (^o)

-83.4611

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012214	Metagenome	282	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100013020	F001915	GGAGG	MEWRLAHPLDDVDDIVEMADSIFGQEADGILTRDRQLFRKHVTVAATVQLFDKGREFLAVCRDVDRLVGYCWFDRGGYTTYAAEEISNAKFHHLDLALPAKTRVRLLNEMIDQHILWAKSWGIPVICSTSIRAEHDGFMRIHKKRGFTVNGSYAWIRTEDGLKGITCK
Ga0213921_100013021	F012670	AGG	MQIDKPDSPIYGDIRPEGSTVNSEEKKRIAREYYQRKKAQQKAMKLATGQQEPKEPKAAAVTGRPKSIVNRVTEYGALFNKLNDERASKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVNNVQKDEEVSADDALDDFLQSLRKV
Ga0213921_100013024	F040590	GGAGG	MSAYGKIISGGKAMTNGLTKGINDKLKTFTSSNERAKMLATSVRNTFNQNPLSDPHLNNINVAASKKFTTPKLPTKV
Ga0213921_100013026	F001059	AGGA	MATYDIDALKEDLPTAKDLAQFVYDKTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDKKELIPEDDLAPMPERPSDLPDIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVYQVAVGERLNKFGQRVPEKYTWNDPRTAETLMKRPDGTFTERGRKLFQYCSGEKGGGIWSLIDRELTSISSKNIVDPWA
Ga0213921_100013029	F004695	AGGA	MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDGEQAAQATEMVKYMVNSKNDSYAIIRDWAQDSLLHKNGIVMISPVREPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRRIDVDLQGVMQEMMAPDEQEQVHNQQEEMDEAIKANTVYRAKYKMTGFSTSVKIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKSQFPYVDIEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVECCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPTKHIYEFSPMQGNLAYVQSSMERFEADKMAMIGMTSPNDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDALYIVWKTLIQYADDYNIQQLAGVCGKGKPFMDAISMDNYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQAQFSQLMMQIDPSAPELFAKMRRPFEDTLRVLGVKDVDAYLPTIEEAAKVAQAKSQQGPSAEQKEIQSKTDLNNAKAKESETVSALNMKKAEDIDTDNMFEALAAKRGKLNAVEID
Ga0213921_100013030	F003521	AGGA	MKSLVLNIREHFNKRTKAADIHNDADVTRKTLVIENGECASRLIKNEDFALLFNLYRFDLLGRLEESRTDPERIENAFNVAGVRDFIGFVEKTEYLGKMAKKSIN
Ga0213921_100013033	F000857	GGAG	MDDEVKIDETYYSGGILEGGIDGVFRHNDKLFNEVKSGTWSQTFNTPNINYKVGAVDGVRYVQYDQKNVEVIRQKCKELREFYKEHGTENPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKRDKADKILFYAIVNEYYSDFVCHPTGKIPLPYNPSIPTK
Ga0213921_100013034	F005087	GAGG	MALFIQSANALVSRIAQWVGAIPSSISINATAFNSATGVITCSANPTSAVLVGDFIGPNMMGPFSAVLAVSSTTITVNDPDGMWVGITYPATILKLPSASSLEIQSCIQMAELKMRTIELPALRSDPYATVAPATLTTNAQGMAPIPSDMCFPILFFQESPPSNQPPGATALGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVVIKAYYQKTFPFLFSTTGDALNPIVQSNGVLASFPEGYLYGTLSAYYDKNKNVEESQKWDARFDAAYGLIEDQNYKGKWRGGDQHLTSEYQPRNYRYSFK
Ga0213921_100013041	F012214	GGTGG	MSDYQRLRTPFPSMSFTPDVPSNALGPNEYNNGLNVEADVRGIKKIYGEQEILSTIPNYPIFMDGGFRGEAQWVYIVATRDSSDHGRWYLITSAGISNITPGVGGNPSAYLTGYTADINITTSWVGNVFFINDGLSSPMYLLSTATEIYKYDAAPDNYVWNYDIGVSATRAGFVRNFCSPNVGNILIAGNLTKDYTSSGLTVNYPTTVRWSQAFANTGVPATWAPTLSNVANEQEIPVRGPIVDGFFLGGNFYVCSYWDTVVFSPIAYQNSTAPIFGVRLFNQGRGLINNNCWSNTDTNVYGVDSRDIWVFNGSDFAPLGNQKVRDYFFRNLSPTYSDRIFMINNTQKNQIEIYYPDLTSTGWCNKMLSYRYDLQIWNAPKDIANACMGAEAPVYTGGVFKFASRTVTYAPAGASSKLIQTNIGNSFINSAPIPALFERNNMVLQGSQGPVPYSSKVYIHRVLPEIAGTGAIDITVGGANSTAQPATYGQTGHVNIVTDNPWVTTQQNNVRTVSVKVQSNDATDAWNLTALNWQATVVEDAF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213921_1000130

Overview

Ecosystem & Geography

Associated Families

Sequences