NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1000292

Scaffold Ga0213921_1000292


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1000292 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18148
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (7.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025278Metagenome / Metatranscriptome202N
F032560Metagenome / Metatranscriptome179Y
F054853Metagenome139N
F086624Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_100029212F025278N/AMTIFLTIVFLVHLISWILYQKFQFKERDLYATDSHNAYEANKKWHFWKGINHLSVYVLVWSLYGFWSMLLFATSFWFGFDILCNIIVLKRPAFYVGQTAQTDLFIRKVAEFIKIKPEYASALIKVLILLILLILK
Ga0213921_100029221F054853AGGMQDEKTNIEPEVSEEAIEWEEAETTTRSDLISCAYYAYSAVEDIDLTLVSKIEANKIRRIKRQSLDIIAEVIGEMHAEIFDLGEED
Ga0213921_100029227F032560N/AMKQETYQDLENGMQKLLPMERQMLLAEVYHYCWYSPEAYNELKAFLNKWEEGCQVKAVFFKPESEDSTKQI
Ga0213921_100029228F086624N/AMSEVKKESIGAWKRTTPKGEVINFTINGQRYNMWVNAYKDKPAHPDYKIYEDNYVAPTEPKPQSKQEF
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