Scaffold Ga0213921

Basic Information
Taxon OID	3300021952 Open in IMG/M
Scaffold ID	Ga0213921_1000427 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021952 Open in IMG/M

Scaffold ID

Ga0213921_1000427 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14033
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (54.55%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14033

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (54.55%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.9266	Long. (^o)	-83.4611	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

33.9266

Long. (^o)

-83.4611

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007799	Metagenome	344	N
F016529	Metagenome	246	Y
F044361	Metagenome	154	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0213921_100042713	F044361	N/A	MTQWTPEWRVTIEGVVVTNTVLANLAISSGRTNIYTQAQAGYCTVNLINLNQGAIPAKINDAVTIEVKNTAGTYIAIFGGSVVDITVAVSQVGSVSITQEITITALGALARLQKALTNGVLTQDYDGNQIYSILQDLLVNNWSEVPSALTWATYTPATTTWANAENTGLGEIDTPGDYLLANRGSSKTITWNLVADLATSGLGYIYENAQGQICYADSTHRSQYLAANGYTELSANDALGRGIKIQTKAGDVRNDINLVYSAGNVTVTDADSIATYGDLAQQITTSIKNAGDATSQANFYLTLRSTPQPFLESITFALTNPELDNGDRDALIGVFMGQPVSLANLPANMQSGNFLGFVEGWRFQASYNELSVTLIMSPLPFSLQAMAWQDVSVLEQFNTLSGTLDYAHALVVN
Ga0213921_10004273	F016529	AGGAG	MPVLRFDCSICKKLYGDARQEHLITKGKELTEHEWFAQCAGCGSFSVKLVDDELVAGLE
Ga0213921_10004276	F007799	AGGCGG	VSFLDNYEDVAARIQRFWATYPNGKIHTSIMDVNLEKGYVLVECRIYRNYEDKEPAGIDYAFGNVNTYNIQMKKWFIEDTCTSAIGRCAGLVLGTDKRPTVQNMRQVEQIDSQIVQDSAKDYDYWSTKFGDVPSFNSQQEADAAGIPTLGTAIDEIKGSLGGVQIAAAPLCAHGHMIWKEGTSAKNGKAWGGYMCVEKVKSKQCPPVWYTLASDGQWKPQI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213921_1000427

Overview

Ecosystem & Geography

Associated Families

Sequences