NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213921_1004386

Scaffold Ga0213921_1004386


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1004386 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2965
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F006220Metagenome378Y
F013087Metagenome274Y
F040618Metagenome161N
F095470Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10043861F040618N/AVKIKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFTPEENYFDGVGSFGNEIWHLNPDNGEMCGKTYLYSTMTDILCVPYSFSQPTKEKSPTFLFAIS
Ga0213921_10043863F006220GAGGLKKFKKYNEELSIASGTEMMKASQMRTVVFNDKTKYNRKVKHKKGSNDD
Ga0213921_10043864F095470GGAMKTVIWNSNEVWNQSHHFEPLIEDITGFDLRRSLCSESIKYMAKRLSDTKYSRVFRSKYSIFEDEYKALVEKFKQEADNNGKIEVKFEKV
Ga0213921_10043867F001561GAGGMQTREQKLKLLNKTIETLWHGVSDTKEGDYPKIVNLYKEVLKLNPKDRDAWENMVWLMWSMAINKKDTAWLFEAEKFAKMYLSINPNGYRAFEYVGQFYRIMMVDERLAIRYYESALRWKDAPETTFHSLTSLYIKCGDKVRAIGNCRFNLRRYPNDSYAKSKLKELTK
Ga0213921_10043868F013087N/AMEPTVWIYFSKTGTGYELQGTDIISGFDAFINTAGTYLIEYSFAEIKEEMYFFIYEWDNSQKKRRTIYERHQRQNILLNFAKNVDLVHNIRQAIYKEYMDEEETENANS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.