NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1012198

Scaffold Ga0213921_1012198


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1012198 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1562
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10121982F000403GGAMSDFMEIINPQTMIAKLYFNGEVIEEYKVEQCDKCSKLTKLDSFGYQKGYGNEKIIWFCGGCR
Ga0213921_10121983F012452AGGCGGMGFLDNYEGNKERTDRWIATYPDGRLEAHIINFDAEKGSILVQAKAWRDQNEIEPAGIDYAFGYLAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATRETMQQVETMTTKVATADPKQEYDYWTTKHGDVPSFKSEDELTAAEKAQTIGGAIQEVTAQLGGEMLAEAPQCQHGHRVWREGVSARTGKAWGNYSCVERKPNQCDPVWYVFTSDGTWKPQI
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