NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213922_1001699

Scaffold Ga0213922_1001699


Overview

Basic Information
Taxon OID3300021956 Open in IMG/M
Scaffold IDGa0213922_1001699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7989
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F020664Metagenome222Y
F029673Metagenome187N
F032957Metagenome178Y
F079808Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0213922_100169912F004231AGGAGMSVKPSDFQHEICVYLEGIGECLVCFDILTPGDELDADHSDDYEIDFAVFDEQDKHITYDIDRKQYNHCENKAMDEMRDITTQWHKEWEECFD
Ga0213922_100169913F029673N/AMIQHLRMVAVSENTITGMSNAFDLGAEHERDVVSSIIFNMVKDQHLAQNIVDTIRVRE
Ga0213922_100169917F079808AGGAGMKIKDEMQAIYEDEANVYYCCYCLQPQAGKIGCCQENHFVEFRYLDNDCKQQIAEEILNG
Ga0213922_100169918F032957AGGAGMDDELMGTTRLFPRTLEEAYPKIYVNEGVFEGPFYSAPHINDVWVLFGLITVISMVSVAIWRYF
Ga0213922_10016994F020664GGCGGMEKQETKHNLIKFTEAERHILKTIGKGSYAEGARICIMWGAHFYNLGLNTEMDLRHIGLVTVSTTDKHPHE
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