NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000230

Scaffold Ga0222717_10000230


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000230 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49036
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (83.52%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008724Metagenome / Metatranscriptome329Y
F013465Metagenome271Y
F025380Metagenome202Y
F032035Metagenome181Y
F046004Metagenome / Metatranscriptome152N
F086178Metagenome111N
F092737Metagenome107N
F099858Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000023035F008724GAGGMSKMNNWMMDIEDFCNGYFFDAPVPNDFSVDEIVEDVGMYFKSNEASKYAKQYLTEQMGE
Ga0222717_1000023054F046004GGAGMKKLMIGVALATCISSVAMAEEKKVSSVLPKIDMSFVTDTERNVTQETTSTKFGVVAGIKGFDLSVKPSFSWDDSEISNVEFWGGYTFDVNESFGITPYGEVNFNNDFETADKIVGVKTEYKF
Ga0222717_1000023075F025380GAGGMELGTKIIGDFGGYTELWNGEVVTISPISSCPALTPEVKIKWDDGSYSWCELSFINANKGIGYFTEDGYYE
Ga0222717_1000023083F092737GAGGMTALWYKWYIHLREEGYSIGTALVAGWWNASINAQYWTEGPKKWVDNRPDRYYRG
Ga0222717_1000023085F032035GAGGMSRIEPNTYSYVTKDGYEHMAVMMEEGKYKGVAWGYTKINLPKTEDGRAVLSFEFEILDNAKLEFEDIDEEEFMNLMGDILADQIDEQLETGRVKFA
Ga0222717_1000023087F099858AGGAMTDITDINPIVNVGTDKNPMYVLDATWMTVLYEKITGKDFKGDDDYLEFTDRFVKEYNEGGFDTTLAIKRMM
Ga0222717_1000023088F013465GAGGMNEQEYRDIYAEYCMESGERMTDRGFREFKAWRKRVEELFEKREDSS
Ga0222717_1000023089F086178GGAGMTTLAAKGYTTDGVPVFLWAYGNYKYEVEVKKLNFTESEVFDASFNEAVNKFEDRAINGVEFF
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