NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000428

Scaffold Ga0222717_10000428


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000428 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36309
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (83.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014447Metagenome263Y
F021675Metagenome / Metatranscriptome218Y
F049758Metagenome146Y
F062682Metagenome / Metatranscriptome130N
F088928Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000042814F021675AGGAMPLYTFKNTKTNEEYDEVMSYEELQEYLKQEDIHQVFKMNIYRYSDAGGIKDQFTEWAKDDKVNGKGDFKPYGKGKKGFSKMKQQQEEKKGNG
Ga0222717_1000042819F014447N/AMKTKITFEITKHNYKAFGIQNNREFRKYKSRALKDLNNNSLIFQKYYKPVKSSIYNSINQSIQGGKSKNARYNHSL
Ga0222717_1000042820F049758GGAGGMYHIILWLSLIFGSVFSIINNEIYLSLSLFLIFAINVAYNFTK
Ga0222717_1000042842F088928AGGAGMTELTPKHFEVIDKNKAKAYEDRKEMKKELTEFIDKCNAYELQRMYSEFKRLRREV
Ga0222717_1000042866F062682AGGAMTAAKIYILTIMLCSVGQPQCVMPQVITEHETHYDCVKHGMGDGYEVLFGSDLTKQQINDAKLYVRFSCVPKDIVES
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