Scaffold Ga0222717

Basic Information
Taxon OID	3300021957 Open in IMG/M
Scaffold ID	Ga0222717_10000539 Open in IMG/M
Source Dataset Name	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021957 Open in IMG/M

Scaffold ID

Ga0222717_10000539 Open in IMG/M

Source Dataset Name

Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32410
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (67.69%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

32410

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (67.69%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.0966	Long. (^o)	-122.4216	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

37.0966

Long. (^o)

-122.4216

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028622	Metagenome	191	Y
F031512	Metagenome / Metatranscriptome	182	Y
F054348	Metagenome	140	N
F066804	Metagenome / Metatranscriptome	126	N
F072744	Metagenome	121	N
F080239	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222717_100005391	F031512	GAGG	MLNEKMRNLVDALDKTHQSYVTKLVSNGGVSLEASKLGREYKDIQREIIVVDIVEKKKLY
Ga0222717_1000053912	F028622	N/A	MQDEDKTYENEVRPLLNDDRGSLDLTKQIDELNKKVKNLHGLEKIHKETNGDLRLHILKLDKEIYQLKKDMAIEKENHQVNIMEKDNEIGRLIKKITEK
Ga0222717_1000053919	F080239	N/A	MYLLKIIKIKFYVSRIVGEVFSSLNLEITSSLKDLLESKNNIVYKKFSGVINPPILDRWNWLVVIPQQFNRYAYPCNLLTVLVPPISIIKNYLLLIKNNINKSQIIKKEKYEHQDS
Ga0222717_1000053925	F054348	AGGAG	MSKSVIERVKYIEHKQISEYDKDQIEPIVYLNIFKANDTLYGFKEYDYFRNGALKSKAWELGCYMDLKFIKKDVEEFNKQKIIIIQRAKVVS
Ga0222717_100005393	F066804	N/A	MPISYLEFKLNKEIAYEDTFEKDKEIRKEYDEYVKQIKREEEKMLDKPIYFNVYKVESDNPKAPTFSWNGFTVKEDIVIKAGTKIDMTFWGNSTNQKDGKPNPHLKISNHVPRENKGGVSDRDINYPTKEQVAQQDNNYLDDDINF
Ga0222717_1000053937	F072744	N/A	MKDQDKKPLIVPQERHELTPQGKKYTTLVMVNVRECGLDYMFHKHLIVDYQHKAGIKFRQIFESSAIGGMKGRDLGAFIISGAKDKVSYGALHNIEQLVEIHKVLGNKGFEIASYICGQDYSLKQTRNILHIDQRYMGSRLREVLDDLSRHFGFFKQKFY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222717_10000539

Overview

Ecosystem & Geography

Associated Families

Sequences