NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10001419

Scaffold Ga0222717_10001419


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10001419 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19636
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048179Metagenome / Metatranscriptome148N
F065545Metagenome / Metatranscriptome127Y
F077044Metagenome117N
F082387Metagenome113N
F091615Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100014192F048179N/AMRELIRKILREDLEYSHVTDASADSDEYEMSEGWEGVPKKNELSPQVKEFLFDYWSKNGTELTPCRYIGIDCLTYEEEIDKLKIEYYGGFYKSYELAKKGIDIGKKVHISDGGYEFDLTPLSVGIIKQDTDNPDENPYDVEIGVNVRISDGSVQLLNNDSNYRWDFFDLFHRDNDIDEDTLLEIVTEISGAAKEHFYPIFDKYGLFLGGLSHNYRDAWRK
Ga0222717_1000141927F065545N/AMRDLIKKVLREESESMDMMHFWNNSPKVIDTSNTEQMDEFMWYMIDYVDFPSDGNYKRIKPFVKSLIRYGLIDIKFYNEMYRWLNRRLKDISTFEDEFQLSLDYVGGDDSYSDWKWHVLSLGKNNFERLKEGWDNTIEAVESLRPIESFNYAWPHPYDLRSRN
Ga0222717_1000141935F091615N/AMSKDYFNTLPSGYIEYIEKMMGTLVIGSYKAPEWSDDWDIRLDDMKGNPVFSINGESSYPVYRINYSNPAFLFNMVPMGGEGEQLEFIVQVYDKYNVERLIHDFFERKNQDIDIIGKKRGFNRWTPFN
Ga0222717_100014195F077044N/AMEKNGISFNLFDNMIHNEPMRWQSIECEYEHNLFFLSHLNNYVNNYPIHELMVDEIPEEYDYLFDSCTIEELIQVREELLVCMN
Ga0222717_100014196F082387N/AMKNVVIIHPQFGQLLNQEFENELDQHKVYLNAIHSALALKNPLSMFNGVDNLIHIPYDILKDCVIVGSTSSMTLGRYAVTKMKEGVN
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