NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10012713

Scaffold Ga0222717_10012713


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10012713 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5800
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F007006Metagenome / Metatranscriptome360Y
F024584Metagenome205N
F039351Metagenome164N
F050674Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001271310F050674N/AIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINAHWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSEW
Ga0222717_100127135F005315N/AMFIITCGDSFTQGEGLTKQSQAYPYLLNAKITNLAQSGASEYLITTQIEQAVKLKPDLIIVGHTSEYRWEVWDVRNKIQQGFLVANHVLKNEKYYRQWNLSEQILCNTRNRKEHKAAWHAAGMLYFSDVDLVQRIWSGAVAKQIILAQRANIPMIHHCCFPHLQSLLSELTDEYIEFHLDLEKHKDLAPDNSHAGAKSHKKLADMIMDKLS
Ga0222717_100127136F039351N/AMSRIMVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVIYVKTCATRDFKHLTPEHHRAYTTTDLFEKIKLVKELEYNVLEQYKHKLILLGGIEKIEPDFDCYFKIPSITEFFYPDFKDTTIFGDYTHFEKYSDGDKKGAMKLWKLWEHKHNFWKDHPEYFASATDQVHPNRKATKALAEFIHNHIS
Ga0222717_100127137F007006AGGAMEVALKAELRKEISRIVDLMIQGEAIRESINELKKDIKSEYDIPVATITKIATIVRKENMEEEQEKWEEIKEYVEACM
Ga0222717_100127139F024584GAGGMYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYEILKDKLFESTRSLNIEAAYADRCIHWNQNDLSQIKPVNNMRNPWLRFKREFEQCLDGKMPSKNIEIALAWFYAAPYRDDWIAS
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