NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10019183

Scaffold Ga0222717_10019183


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10019183 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4604
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007835Metagenome / Metatranscriptome344Y
F014153Metagenome / Metatranscriptome265Y
F016625Metagenome / Metatranscriptome246Y
F078591Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100191832F007835GAGGMPFGPTTLRNEREEFVLQKIEYYKVNEYMGRSNWKRHYFDTYKEAVKMFKKLKQEKRKILIYACRNDELGELSTGLNDRFIK
Ga0222717_100191834F078591AGGMAHFRGVCSIESCTKYQYTGRSAVQNLVKTTIFKGLTFKSIPDTIKT
Ga0222717_100191835F014153AGGAMSYMYTKEQIFTEFKDVTKKDKSKKKESYTNRIAYLTALKEDMIKVPKNFSNLNLTTDQLQNLIDDWSAPKPIDAFYKRIFNMTYAEKKAEEEAEYFDLSKKEKVYKKKEQVDTIQ
Ga0222717_100191837F016625N/AMRTMMMITIAVLMTMTMAKSDETIDTKVKTFIFNEVNEIKEYQKASWQEGKEQNAKNWAKIKALFTKVKDNVTQD
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Institute for Fundamental Biomedical Research
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