NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10029852

Scaffold Ga0222717_10029852


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10029852 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3609
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015039Metagenome / Metatranscriptome258Y
F048102Metagenome / Metatranscriptome148Y
F050682Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1002985211F015039GGAGMAGADNTRRIYVTVALEILRDANEQEVIAECDYTFEHADIVDTEIMGEDEHYA
Ga0222717_100298523F050682N/AMQNTKYENTVIATIENFAALIKNAAHDSVVEKNDYSIIDNVQALQYVYANYAQHSTVASLASAALSSNLDTAVRENINAQLTFIN
Ga0222717_100298524F048102GAGGMLIEKDTKEATCGFFAVADIDTRAAAAYAANKQLFNSKQHTTKVELVDSIVKSMFAGYATAYQTSRAATSKRAAHTEVKYFRVVTYAANKHKQLKAAAVEQLAALGLDLVYKPRTDSYSVHVI
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