NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10036407

Scaffold Ga0222717_10036407


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10036407 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3235
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015461Metagenome / Metatranscriptome254Y
F021087Metagenome220N
F022159Metagenome / Metatranscriptome215N
F025231Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100364072F021087AGGMRMFNMTLEKHLEEMGIRPKSIIRELEEVLDPRLTYLAKGYFNDPRNGNNEVPF
Ga0222717_100364074F022159GGAGMTLDTRMVSMVLAENANEFITVKFLTKDNEERTYNGRLNVKKYLVGGERGRKAADVLKKHNLIPMFVGKDGEKPKYKSFCIDRVLAMKAGGRHIFGMGNEIV
Ga0222717_100364078F025231AGGAGMEVRETYYEVYLDGELYHQGALESCKYYALRALDDDCAEVYKVTVTEEKVAI
Ga0222717_100364079F015461AGGAGMENILAELKAIMQDAHEASARAGEYKMDIDRGINVNHTPEYDTSVTKQDKINSLFEYLTDAKFDMDRVQESLKDIHNKLDDLLELVEYENIAKEIR
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