NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10051134

Scaffold Ga0222717_10051134


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10051134 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2677
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F048285Metagenome148N
F098031Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_100511343F002399GAGGMRNETRSRYKSIIGQLRKKYGLKDDTPIHKVEQIMTPKDWKAFSTALTFPNGKPTRGK
Ga0222717_100511344F098031AGGMMKYNVELHVIQIHDVEINATSYEDARNKAIQEWKDGYIYNDVGSPTFCKEEAKVVSFVSMPTIEEQD
Ga0222717_100511346F004603AGGAGMIFTININGHLVDWCYTINNQEKQYHQTWIPRLSDIQIVTKELNGLTVSEVKKLILEDIQPDIQMVRDNTNQKAKARRQKNV
Ga0222717_100511348F048285AGGAMVTLSNQWRCNVKIDSIQLEQATAYILETNKYIYEQAQELAKQHLESSDNKNFKARIKRYESESKETLLHFTDEVTAWAECEKNYPLMDFIYKFFQIKKGYYE
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