NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10102433

Scaffold Ga0222717_10102433


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10102433 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032867Metagenome / Metatranscriptome179Y
F042853Metagenome / Metatranscriptome157N
F054777Metagenome / Metatranscriptome139N
F102056Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_101024332F054777AGGAGGMTNKINDETLERLYEDVVADDEKGLIDDDVNEIAHLYNLHADDDRDEILQFIAENEFYKQFT
Ga0222717_101024333F042853AGGAGGMRKEGTYLIEIERHYIATIEVDADSEGQAKRYASSDENQHIANRNEDYFYNFQDLIHSSEVVRFKGYEED
Ga0222717_101024334F032867GAGGMEDLEKMIDDLIDNHYRVQHLIGTEEEESEYLQNIKEVDDE
Ga0222717_101024337F102056GGAGGMNKEFEKELVELLNKYYSTNWDYVWEFIGDTIETKLWLGEEVDDE
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