NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10540109

Scaffold Ga0222717_10540109


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10540109 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006918Metagenome362Y
F015994Metagenome / Metatranscriptome250Y
F029277Metagenome / Metatranscriptome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_105401091F029277N/AQVKYRIMTRNELKTMFLQMDCSNIPEKKQIIVNYNNNPWWEGYGDVKILSDGPSGYSSFSTHQENPFLYLSECKEFLSGEYELIIK
Ga0222717_105401092F015994N/AMFKVNKKDIFAKNMSNQELHQVWQKLKAKQEMDEWFDQLEKKYNEEKQDKYY
Ga0222717_105401093F006918N/AMRDYSITRRKGEWYHAKVTDSYGNDYQNYFEHAHEANDWIYFVWSK
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