Basic Information | |
---|---|
Taxon OID | 3300021958 Open in IMG/M |
Scaffold ID | Ga0222718_10000916 Open in IMG/M |
Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 30046 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (59.38%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022312 | Metagenome | 215 | Y |
F024309 | Metagenome | 206 | Y |
F078591 | Metagenome | 116 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0222718_1000091616 | F022312 | AGGA | MKPLTASKIIPGKKQELLKIEDLFDLPNRTDDNYMEYLNNVYKNLDKVGMENPILVIRKDDYWNRLPWTGTDTQLGVVTGSNRFRYAVDRGYTHIEGIICKNRNDWFPLWQSTFYRVK |
Ga0222718_1000091646 | F024309 | N/A | MDITHGLLLFFIGCTVTFLGFFMAFLVINYNKKKELQKLEENEIKKKMPHHYYGDDTV |
Ga0222718_1000091658 | F078591 | AGG | MIWGVCSIESCTKCQYMGRSAAQILVKSTIFKGLTNKSIPDTIKTINTNKGQ |
⦗Top⦘ |