NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10001801

Scaffold Ga0222718_10001801


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10001801 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19910
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012180Metagenome / Metatranscriptome283Y
F101264Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000180112F101264GAGGMKLSNLMSTPIDTKTFNELPPLHKEVVADFFKVLDKEEGNMVDKVETAIDIVADHHNVKTDVLYNYIDNEVDAQLGVK
Ga0222718_1000180123F012180AGTAGMYKIAVTAFLLWLVSFTTSFASEQKSDEWTLFDLQKRVEDLEKKNNFDIPSGFFINGELEGRYNDKTYDSGWDSRGEFQLGISTKVDTSLGIDWVGASGTYDSYYELDHTQDNTLVEKQIGFGNDNTRLYIGETDAQRLGFAKTPKISVPLIYTETNYRIDHREKTVVTFGGWNYDNEFDFDSYRLKREKPWGVALGWDNDGNVGYATGTINLMGYADLSYMTVQGPEETNKGDQQGWSLGGSLHRFGVPMLWGVEKWDDKNTGLASKDRYDYGVMYNLNLQTYVTAHRTENDDLGYTGNFYGVVHNIYANYDENKRPDKQDGLELGLYLHDKEQTSVYTGAFTDHGQQILASIRYKF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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