NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10003374

Scaffold Ga0222718_10003374


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10003374 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13738
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (68.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018158Metagenome236N
F045686Metagenome152Y
F101066Metagenome102Y
F103093Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000337429F045686N/AMNVYGITQKSINFFLDIFKFDTEPKGIDKFVEVEFRPQDREWAKIHFMSRYSQ
Ga0222718_100033743F018158GGAMWKVVIALCLFGSNGELLEHTLTKSISDCLEKKRIMTRNMSDNVLITCGEVEAEIQVLQGKEFIKSIRKKGG
Ga0222718_1000337430F101066GGAMSQPQSYIIVDNEDGTFTAYVNFGSWQSKEEAEYNLDLAMQMLGLNITKTPTVH
Ga0222718_100033744F103093N/AMATQKELEKQLKEAKKELRETRTHNQFLLDRLEVAHARTSEWIKKFYEKTIDDCVLHQKKQAEYQEKIKKDKELIETFDKQSQVKLNSNLNGNTSG
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