NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10006133

Scaffold Ga0222718_10006133


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10006133 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9615
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013421Metagenome271N
F017147Metagenome / Metatranscriptome242N
F018943Metagenome / Metatranscriptome232Y
F020191Metagenome / Metatranscriptome225N
F074760Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1000613313F013421N/AMTNFKYYYNNVPGKGLCRNNLIYTSLINEDATEFCMWFHNDSEYHKGHNEVVDPKLMEMKYTREKDFLLTLDVDYKQIIPRKTRFDPADQKIYFEIQGVDFWEQSHGKAFEDVLPNWQEQMLYIMETHKKLGIYKYSLHPSSYFVIDGELRTINYFFAYKQHEPAITVQEHMSHISQERQKELLPKMKELGIETNKTYPFDKLQILCLESFRNVYPDSFINKAISIYK
Ga0222718_100061332F020191N/AMSNLENIRSLYQSSAYHDILHDVNGVIFPFNPEWKNIGISVSGGADSALMSVLLCSIISQLESNTNVHIITNIRCWKTRPWQKQNSLNVFNWITNSFPNIQFKRHENFIAPDLEWGSIGPNIQDEYGKLKSGNQIELRAHAEYVAHTENLDAWYCGVTKNPDKEFDGRLLDRDIEDVTLDRLIKTHMGGLACHPFTHVQKDWIVAQYKKLGIMDLFDLTRSCEGDNQTYPEIFGDLDYKTYVSGSPVPVCGKCFWCKEREWGVSKCQD
Ga0222718_100061333F074760N/AMMLQKLEAKTNSKILFDLVKHLPEGKNALNKPTGNFFYDPWELLPEYKDTAIEDLLKQLPDHGEARVIVLKPGESYSAHADVDDRYHVTLDAEQSFLHDIENETMHATKPDDTVYLMNAGVLHSASNYGYKNRYQLVIRKRLQSNRMMNDPRQVVMTSNDPVYNLRYLFDSSFSILLNRLAKEQSIDAFARINEHTIKFLCDGSKINELLKMQQICGFKIDIVYA
Ga0222718_100061334F017147N/AMPNWKHFYKHKQGLAVANMLYQPLVSEDNTVFCMNWNPNDYFENESMNEELYNFWFDQEVVYLSKLKDTKYIPELLDIDYAKREIKFKWYNKNLNVLIETNQIDKIPNWKEKIKQIKQDLEQQNIYKINMYPHTFYFDDNNEAHCMDLYGCTDNDNRYLDIKYLKPLIRTDRFDKFIMNNQLDTHELYKETIRTNYAEWPGDFLNA
Ga0222718_100061338F018943GAGGMRIAITGHTSPMGKDVHEHYSKTHECLGISRATGYDFTNTDSVNDTVSEVLARDVFLNIAHVGTTQSTLLMKLQQRWTQDAPLQKVITIGSLATKVPKKLLDQVGIDKQYLKDKQHIDAVHNVIANEIPFGSQLKFSLVRVLNYGEKTGDRSGEPTCTAQDIIRTIDYVINESMYISTLDVRRF
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