NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10010850

Scaffold Ga0222718_10010850


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10010850 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6780
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035742Metagenome171Y
F077030Metagenome117N
F087931Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1001085011F035742N/AMSIQGDCDKMTKEKGRKYDGVSRPTNDVYSKRWQEIFGKEDTSKELDKDEQDYLDSLKEK
Ga0222718_100108502F087931GGAVKKSIEDQIDIVQQCTMCKSEGELMIDEQRIKTIFDKEREAYRNRDKLTIEHVRSLEKQIENLLRDKASLQDQLNKYINKEMEQR
Ga0222718_100108506F077030AGGAGMNRDYKKALKQLEHIKKLKTDCLVRARRGEFWIKEYTPELNNVTKNFEDTKKLLKGIFEIKHLPWWLHAIAHTQMMISNPIKYFIRIRYYKKGMIDSYWAFKRIKKEWEDDFNMTEEAIDRDYNVYYKCNKTVKKTEFLLKQWEKKIKLRKRYK
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