NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10014347

Scaffold Ga0222718_10014347


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10014347 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5712
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016595Metagenome246Y
F047994Metagenome149Y
F056523Metagenome137N
F085897Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_1001434710F016595GGAMAYYFSCNECNYKEHFNDQFNIPSKALEGKLNDYESVICSSCVSQKTRLKGNYIIIEKGN
Ga0222718_100143472F085897AGGAMAMIEPISLDKHLVDCVSEYKKLRQLQYDCEWNGQTEQASLYRTQSVRLHKLIKDGVLYQPKF
Ga0222718_100143475F047994N/AMSTENVGDRIMSHPMNDKVFDVINDQWTDMSVEDLKDWLVTHRKTNEVADRVYIGLTYLEHKWKQEMFDSYPDS
Ga0222718_100143479F056523AGGAMDTRIYFIKSEYDFDKKQFNSVNNCELTLQFKIMDSCAMIEIIGRYKGRTSEEFKHQILCHKDQMLKILPNVNDQVAKVDEPFNKDRVLIDQRIGVIFEEEKQKEYHLGLHGQIDLEELIEEKKGN
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